68 lines
1.3 KiB
Nix
68 lines
1.3 KiB
Nix
{
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lib,
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stdenv,
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buildPythonPackage,
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fetchFromGitHub,
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pythonOlder,
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setuptools,
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numpy,
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scipy,
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matplotlib,
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plotly,
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pandas,
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hypothesis,
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pytestCheckHook,
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}:
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buildPythonPackage rec {
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pname = "synergy";
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version = "1.0.0";
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pyproject = true;
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disabled = pythonOlder "3.5";
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src = fetchFromGitHub {
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owner = "djwooten";
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repo = "synergy";
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tag = "v${version}";
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hash = "sha256-df5CBEcRx55/rSMc6ygMVrHbbEcnU1ISJheO+WoBSCI=";
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};
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build-system = [ setuptools ];
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dependencies = [
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numpy
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scipy
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matplotlib
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plotly
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pandas
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];
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nativeCheckInputs = [
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hypothesis
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pytestCheckHook
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];
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disabledTests = [
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# flaky: hypothesis.errors.FailedHealthCheck
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"test_asymptotic_limits"
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"test_inverse"
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# AssertionError: synthetic_BRAID_reference_1.csv
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# E3=0 not in (0.10639582639915163, 1.6900177333904622)
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"test_BRAID_fit_bootstrap"
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]
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++ lib.optionals stdenv.hostPlatform.isDarwin [
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# AssertionError: np.False_ is not true
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"test_fit_loewe_antagonism"
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];
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pythonImportsCheck = [ "synergy" ];
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meta = with lib; {
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description = "Python library for calculating, analyzing, and visualizing drug combination synergy";
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homepage = "https://github.com/djwooten/synergy";
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maintainers = [ ];
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license = licenses.gpl3Plus;
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};
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}
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